HI, I would like to share a recent experience after upgrading an AlmaLinux 9.7 system to 9.8.
The system is a physical workstation/server:
Système d’exploitation : AlmaLinux 9.8
Version de KDE Plasma : 5.27.12
Version de KDE Frameworks : 5.116.0
Version de Qt : 5.15.9
Version de noyau : 5.14.0-687.5.3.el9_8.x86_64 (64-bit)
Plate-forme graphique : X11
Processeurs : 12 × Intel® Xeon® E-2276G CPU @ 3.80GHz
Mémoire : 46,5 Gio de mémoire vive
Processeur graphique : NVIDIA GeForce RTX 3080/PCIe/SSE2
Fabricant : Dell Inc.
Nom du produit : PowerEdge T340
with LVM storage, NVIDIA RTX 3080 (proprietary driver), KDE/SDDM, Flatpak applications, and several self-hosted service (partial :OCIS, Ollama, Qdrant, Open-WebUI, etc.).
After the update and reboot into the new kernel, the system entered a degraded state a hang when opening services DBUS …:
- Several core services failed to start correctly.
- DBUS failed and services associated ; network, tty … system hang
- The graphical environment became unavailable.
- Some applications relying on the graphical stack no longer worked properly.
- The overall behavior suggested that the boot environment was not fully consistent.
- Only solution booting new kernel with modify boot : init=/bin/bash
- Rebuilding manualy netwok, ssh, permit take the hand on distant ssh client ..
At first, NVIDIA old driver install appeared to be a possible cause, but subsequent investigation indicated that the issue was probably elsewhere. The most significant observation ( /boot FS was void afgetr update and first reboot !) was that normal operation was restored only after manually rebuilding the boot environment (initramfs/boot configuration) and performing additional recovery steps, but system hang with some dbus errors. patiently correcting each point pointed in logs or no, we arrive at a semi-stable system….
the system booted with several issues (root filesystem remounted read-only, bootloader repair required, PackageKit and local mail delivery failing). The root cause was not package corruption but a large number of SELinux labels lost during the recovery process. Thousands of AVC denials were generated and critical files such as DBus binaries were left with unlabeled_t contexts. Running a full SELinux relabel (touch /.autorelabel and reboot) restored all labels, fixed PackageKit, Discover, Postfix Maildir delivery and removed all remaining unlabeled files.
Returning temporarily to the previous kernel allowed the system to operate normally, which greatly helped the troubleshooting process. Now the system is in perfect state and running ![]()
At this stage I cannot identify the exact root cause, and I am not reporting this as a bug. However, I would be interested in hearing from other users who experienced similar issues after upgrading from AlmaLinux 9.7 to 9.8, especially on systems using:
- LVM
- NVIDIA proprietary drivers
- KDE/SDDM
- Complex service stacks running on the same host
If others have observed similar behavior or identified a specific cause, I would be grateful for any feedback.
Regards
Henri